Time-frequency Transform

Matt Craddock's blog about cognitive neuroscience, psychology, and statistics

eegUtils: an R package for EEG

A few months ago I wrote a post about how there isn’t really a killer EEG analysis package for R, and that many of the things you typically want to do are not really implemented yet. So I’ve started to implement several functions myself and incorporate them into my own package, currently called eegUtils. I’ll maybe come up with a catchier name at some point before I get to the stage of trying to get it on CRAN.

Importing BDF files in R - Events and epoching

In the last post I loaded in some data from a BDF file and showed how to re-reference and high-pass filter it. Normally when running an EEG data we’ll have periods of interest that we want to extract from the recording, typically using triggers sent via a parallel cable or similar. Trigger events A Biosemi system can record up to 16 trigger inputs, representing the resulting numbers as 16-bit (i.e from 0-65535 coded in binary format).

Importing BDF files in R - referencing and filtering

At my recent workshop, several people asked about pre-processing of data in R, and I told them it wasn’t really possible at the moment. What I might have been less clear about is that it is not that is not possible, but that there isn’t really the wide range of pre-programmed tools as in Python and Matlab. So it’s just not practical to do it all in R as it stands.

Maps of the 2015 election results in Great Britain

Occassionally I do something other than playing with EEG data. R can also handle a lot of spatial data - in other words, you can create nice maps. There’s the small matter of an election coming up next month which is probably our last chance of avoiding a disastrous Brexit. I decided to try out some of R’s mapping functions and packages to see if I could come up with any useful graphics of the sort you usually see: maps showing turn-out, who won each constituency, things like that.

EEG processing with Python, but in R?

As mentioned in my last post, an issue doing EEG analysis in R at the moment is that there’s a distinct lack of tools in R for a lot of the typical processing steps. In the past I’ve done a lot of processing in Matlab (specifically with EEGLAB and Fieldtrip) and shifted things over to R for statistics. But all is not lost. For example, with the following code, I can run a bunch of preprocessing, including automatic artefact rejection, and have nice ERPs in R in the blink of an eye!